Nope, the harness for the auto has extra connectors, and is missing some other ones. I have a trashed manual one, and a decent auto one, but I don't think I can use the auto harness for the manual car without hacking them both up and splicing it back together, which seems like too much work. (removing auto wiring, adding reverse switch, etc...)
I know you can't use a manual harness on an auto car without major modification. (adding wiring and connnectors.)
I haven't looked at the ecu pinout to see if they are the same.
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'88 Supra Targa 5 speed w/ '90 7M-GTE 
Currently Running Good  
For Sale: Light blue body parts, Blue interior parts all from '90 supra targa turbo manual.
Also for sale: R154 trans, brake pedal, master cylinder, booster, abs actuator, sensors, abs ecu, driveshaft, 3.90 lsd rear end, radiator, wiring, speedo cable, 8 saw blade wheels, '88 ecu, relays, cruise control actuator (bad cable), empty fuel tank, etc....
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